Variant report

Variant	rs10938755
Chromosome Location	chr4:19454242-19454243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12512140	0.80[EUR][1000 genomes]
rs12646133	0.89[EUR][1000 genomes]
rs12646839	0.89[EUR][1000 genomes]
rs12649775	0.93[EUR][1000 genomes]
rs1490882	0.81[EUR][1000 genomes]
rs16898235	0.82[EUR][1000 genomes]
rs35809778	0.93[EUR][1000 genomes]
rs4364261	0.91[EUR][1000 genomes]
rs4622996	0.87[EUR][1000 genomes]
rs58232663	0.83[EUR][1000 genomes]
rs60274101	0.83[EUR][1000 genomes]
rs60556022	0.90[EUR][1000 genomes]
rs68073340	0.91[EUR][1000 genomes]
rs72619153	0.81[EUR][1000 genomes]
rs7690334	0.82[EUR][1000 genomes]
rs7690452	0.82[EUR][1000 genomes]
rs968264	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19451000-19455000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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