Variant report

Variant	rs12646839
Chromosome Location	chr4:19496559-19496560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10011512	0.88[ASN][1000 genomes]
rs1027214	0.80[AMR][1000 genomes]
rs10938755	0.89[EUR][1000 genomes]
rs11734810	0.88[ASN][1000 genomes]
rs12512140	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12646133	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12649775	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13107399	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1490867	0.82[AMR][1000 genomes]
rs1490882	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16898235	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2130010	0.87[ASN][1000 genomes]
rs35809778	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364261	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4441751	0.88[ASN][1000 genomes]
rs4622996	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4696934	0.88[ASN][1000 genomes]
rs4696935	0.87[ASN][1000 genomes]
rs55864710	0.87[ASN][1000 genomes]
rs58232663	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60274101	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60556022	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62298771	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62298813	0.88[ASN][1000 genomes]
rs62298859	0.87[ASN][1000 genomes]
rs68073340	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6830756	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846990	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6850501	0.88[ASN][1000 genomes]
rs72619153	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7690334	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7690452	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs968264	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19496000-19497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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