Variant report
| Variant | rs62298813 |
|---|---|
| Chromosome Location | chr4:19559326-19559327 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:19559004..19561112-chr4:19562245..19563790,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10011512 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11734810 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12646133 | 0.86[ASN][1000 genomes] |
| rs12646839 | 0.88[ASN][1000 genomes] |
| rs12649775 | 0.86[ASN][1000 genomes] |
| rs2130010 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35809778 | 0.86[ASN][1000 genomes] |
| rs4364261 | 0.86[ASN][1000 genomes] |
| rs4441751 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4622996 | 0.85[ASN][1000 genomes] |
| rs4696934 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4696935 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55864710 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60556022 | 0.86[ASN][1000 genomes] |
| rs62298771 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62298859 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs68073340 | 0.87[ASN][1000 genomes] |
| rs6830756 | 0.84[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6850501 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72619153 | 0.84[AFR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv878734 | chr4:19474680-19598710 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv461286 | chr4:19488871-19709795 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv593786 | chr4:19488871-19709795 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19559000-19559800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr4:19559200-19559600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
