Variant report

Variant	rs10939842
Chromosome Location	chr5:59622392-59622393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10045433	1.00[CHD][hapmap]
rs10939840	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs10939844	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs11746901	1.00[CHD][hapmap]
rs11950649	0.84[EUR][1000 genomes]
rs11952029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12153271	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12188950	1.00[CHD][hapmap]
rs16877912	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs16878144	1.00[CHD][hapmap];0.83[GIH][hapmap]
rs55751723	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6449470	1.00[CHD][hapmap]
rs6865762	0.90[TSI][hapmap]
rs7709678	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59619000-59623400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59620000-59623600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:59620000-59625000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:59620400-59629400	Weak transcription	Aorta	Aorta
5	chr5:59620400-59631000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:59622000-59623400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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