Variant report

Variant	rs10939911
Chromosome Location	chr5:60890897-60890898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10939909	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1472615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892656	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16892657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1862564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6871481	1.00[EUR][1000 genomes]
rs6878519	1.00[EUR][1000 genomes]
rs6890328	1.00[EUR][1000 genomes]
rs7713560	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7728880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7733845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60878400-60895400	Weak transcription	Aorta	Aorta
2	chr5:60887000-60895200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:60890200-60891000	Enhancers	Pancreas	Pancrea
4	chr5:60890400-60891000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:60890400-60892000	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:60890400-60892000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:60890400-60892400	Enhancers	Fetal Thymus	thymus
8	chr5:60890600-60892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:60890800-60892200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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