Variant report

Variant	rs10939999
Chromosome Location	chr6:86552887-86552888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10037889	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10038023	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10041903	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10042601	0.82[EUR][1000 genomes]
rs10051529	0.84[EUR][1000 genomes]
rs10056605	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10062032	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10074359	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10461390	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461391	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10461519	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12188175	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12513730	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12697055	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1344339	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1511737	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1511738	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1606224	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2005573	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2011539	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2011540	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2137129	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2199092	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34185098	0.80[EUR][1000 genomes]
rs34601168	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35740733	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4321782	0.81[EUR][1000 genomes]
rs4331898	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4337857	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4385208	0.84[EUR][1000 genomes]
rs4605784	0.82[EUR][1000 genomes]
rs471455	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs481222	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4865519	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4865698	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4865699	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4865700	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs494540	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5011669	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs552892	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56104926	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58178891	0.82[EUR][1000 genomes]
rs58386948	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6449961	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6863840	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6868380	0.82[EUR][1000 genomes]
rs6871761	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6876902	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6877713	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6897412	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7341010	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7446951	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7447926	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7722742	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9291925	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1022618	chr6:86465365-87432069	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538352	chr6:86465365-87432069	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1034677	chr6:86474368-86566463	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1033637	chr6:86482045-86701733	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538353	chr6:86482045-86701733	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv515896	chr6:86538718-86573165	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases
10	nsv526067	chr6:86538718-86576854	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv818441	chr6:86546123-86565943	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers	lncRNA	n/a	inside rSNPs	diseases
12	esv1802672	chr6:86546123-86662267	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv522858	chr6:86550985-86578833	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86546800-86556800	Weak transcription	Right Atrium	heart

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