Variant report

Variant	rs10941265
Chromosome Location	chr5:35816651-35816652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35816242..35818353-chr5:35834652..35837351,3	MCF-7	breast:
2	chr5:35814232..35817438-chr5:35818379..35821437,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4869674	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6892686	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73090230	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7726182	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35806600-35816800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:35808800-35817200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35811200-35817400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:35811600-35816800	Enhancers	Primary T cells from cord blood	blood
6	chr5:35812600-35817000	Weak transcription	Dnd41	blood
7	chr5:35812600-35817400	Weak transcription	Thymus	Thymus
8	chr5:35815000-35817200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35815200-35817200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr5:35815200-35818000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:35815400-35818200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr5:35815600-35817000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr5:35815600-35817600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:35815800-35816800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:35815800-35817800	Enhancers	Fetal Thymus	thymus
16	chr5:35815800-35818000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:35816200-35816800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:35816200-35817000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr5:35816400-35816800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:35816600-35817800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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