Variant report

Variant	rs7726182
Chromosome Location	chr5:35815010-35815011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10053847	0.90[JPT][hapmap]
rs10941265	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567754	0.81[JPT][hapmap]
rs13167136	0.81[JPT][hapmap]
rs1389834	0.90[JPT][hapmap]
rs1389835	0.81[JPT][hapmap]
rs3822731	0.81[JPT][hapmap]
rs4869492	0.81[JPT][hapmap]
rs4869674	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6891095	0.81[JPT][hapmap]
rs6892686	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090230	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9292618	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35806600-35816800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:35808800-35817200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35809200-35815600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:35811000-35815400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:35811200-35815400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:35811200-35815600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:35811200-35817400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:35811600-35816800	Enhancers	Primary T cells from cord blood	blood
10	chr5:35812400-35815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:35812400-35815800	Weak transcription	Fetal Thymus	thymus
12	chr5:35812400-35816600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:35812600-35817000	Weak transcription	Dnd41	blood
14	chr5:35812600-35817400	Weak transcription	Thymus	Thymus
15	chr5:35813800-35815200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:35814400-35815200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:35814600-35815400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:35814600-35816200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:35815000-35817200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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