Variant report

Variant	rs10942625
Chromosome Location	chr5:90410692-90410693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90408615..90411255-chr5:90413057..90415567,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10063704	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11739054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518689	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13154380	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1808084	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1852732	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367282	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367283	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4489092	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4512153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4608951	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4916845	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731652	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90395400-90415200	Weak transcription	Left Ventricle	heart
2	chr5:90396200-90422800	Weak transcription	Esophagus	oesophagus
3	chr5:90401600-90431800	Weak transcription	K562	blood
4	chr5:90402400-90413600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:90403000-90415600	Weak transcription	Right Atrium	heart
6	chr5:90403000-90431600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:90403200-90431600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:90403400-90418800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:90403400-90418800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:90405800-90410800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:90406600-90421800	Weak transcription	Small Intestine	intestine
12	chr5:90406800-90414000	Weak transcription	Fetal Lung	lung
13	chr5:90406800-90418600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:90407200-90415800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:90407600-90415000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:90407600-90416000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:90407800-90414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:90408200-90413600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:90408200-90414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:90409200-90418400	Weak transcription	Fetal Brain Female	brain
21	chr5:90409800-90411200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr5:90410000-90410800	Enhancers	Fetal Muscle Leg	muscle
23	chr5:90410000-90411000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr5:90410200-90410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:90410200-90410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:90410200-90410800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:90410200-90410800	Enhancers	Spleen	Spleen
28	chr5:90410200-90410800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr5:90410200-90411000	Enhancers	HUVEC	blood vessel
30	chr5:90410400-90410800	Enhancers	Primary hematopoietic stem cells	blood
31	chr5:90410400-90410800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:90410400-90410800	Enhancers	Brain Anterior Caudate	brain
33	chr5:90410400-90410800	Enhancers	Fetal Heart	heart
34	chr5:90410400-90410800	Enhancers	Stomach Smooth Muscle	stomach
35	chr5:90410400-90411000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr5:90410400-90411000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:90410400-90411000	Enhancers	Adipose Nuclei	Adipose
38	chr5:90410400-90411000	Enhancers	Brain Hippocampus Middle	brain
39	chr5:90410400-90411000	Enhancers	Colon Smooth Muscle	Colon
40	chr5:90410400-90411000	Enhancers	Fetal Stomach	stomach
41	chr5:90410400-90411400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr5:90410400-90411400	Enhancers	Rectal Smooth Muscle	rectum
43	chr5:90410600-90411000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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