Variant report

Variant	rs7731652
Chromosome Location	chr5:90401398-90401399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90399443..90402350-chr5:90413379..90415651,2	MCF-7	breast:
2	chr5:90396862..90402705-chr5:90677587..90681217,8	K562	blood:
3	chr5:90396522..90401651-chr5:90675518..90681239,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10942625	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739054	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518689	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12652491	0.80[AFR][1000 genomes]
rs12657388	0.85[AFR][1000 genomes]
rs13154380	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1808084	0.80[EUR][1000 genomes]
rs1852732	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367280	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367282	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367283	0.80[EUR][1000 genomes]
rs4386756	0.85[AFR][1000 genomes]
rs4489092	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4512153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4608951	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4916845	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707023	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90393600-90402600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:90394400-90402800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:90395400-90406000	Weak transcription	Fetal Heart	heart
4	chr5:90395400-90415200	Weak transcription	Left Ventricle	heart
5	chr5:90396200-90422800	Weak transcription	Esophagus	oesophagus
6	chr5:90398000-90402800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:90398200-90401400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:90398200-90402600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:90398200-90402600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:90398200-90405200	Weak transcription	Brain Anterior Caudate	brain
11	chr5:90398200-90406200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:90398200-90406400	Weak transcription	Brain Angular Gyrus	brain
13	chr5:90398400-90401600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:90399400-90406200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:90400200-90402400	Weak transcription	NHDF-Ad	bronchial
16	chr5:90400400-90401400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:90400800-90401400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:90400800-90401400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:90400800-90401600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:90400800-90401600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr5:90400800-90401600	Strong transcription	K562	blood
22	chr5:90400800-90402000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:90400800-90402200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:90401000-90401600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr5:90401000-90402200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr5:90401000-90402400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:90401200-90401600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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