Variant report

Variant	rs10942626
Chromosome Location	chr5:90509033-90509034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90446025..90448887-chr5:90508426..90510509,2	MCF-7	breast:
2	chr5:90457420..90459780-chr5:90507061..90509068,2	K562	blood:
3	chr5:90507124..90511686-chr5:90677288..90681883,8	K562	blood:
4	chr5:90507715..90510171-chr5:90677652..90679531,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12514996	0.86[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12520306	0.86[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes]
rs12521670	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658748	0.86[MEX][hapmap];0.83[MKK][hapmap];0.91[AMR][1000 genomes]
rs72786311	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv508369	chr5:90487017-90518540	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90507000-90510400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:90507200-90509200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:90507600-90509200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:90507600-90513200	Weak transcription	Psoas Muscle	Psoas
5	chr5:90508000-90509200	Enhancers	Fetal Intestine Large	intestine
6	chr5:90508200-90509200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:90508200-90509200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:90508200-90513800	Enhancers	Placenta	Placenta
9	chr5:90508400-90509200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:90508600-90509200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:90508600-90509200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:90508600-90509200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:90508600-90509200	Enhancers	Osteobl	bone
14	chr5:90508600-90509400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:90508600-90509600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:90508800-90512800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:90508800-90514200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:90509000-90509400	Enhancers	NHDF-Ad	bronchial
19	chr5:90509000-90509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:90509000-90510200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:90509000-90513000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:90509000-90513200	Weak transcription	A549	lung
23	chr5:90509000-90514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:90509000-90514200	Weak transcription	Hela-S3	cervix
25	chr5:90509000-90514400	Weak transcription	Adipose Nuclei	Adipose
26	chr5:90509000-90514400	Weak transcription	K562	blood

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