Variant report

Variant	rs12521670
Chromosome Location	chr5:90510663-90510664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90507124..90511686-chr5:90677288..90681883,8	K562	blood:
2	chr5:90510244..90526030-chr5:90672528..90682389,53	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10942626	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514996	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12520306	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12658748	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2175437	1.00[AFR][1000 genomes]
rs61156097	1.00[AFR][1000 genomes]
rs72786311	0.91[AMR][1000 genomes]
rs72786350	1.00[AFR][1000 genomes]
rs72786353	1.00[AFR][1000 genomes]
rs72786354	1.00[AFR][1000 genomes]
rs72786358	1.00[AFR][1000 genomes]
rs72786360	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv508369	chr5:90487017-90518540	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90507600-90513200	Weak transcription	Psoas Muscle	Psoas
2	chr5:90508200-90513800	Enhancers	Placenta	Placenta
3	chr5:90508800-90512800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:90508800-90514200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:90509000-90513000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:90509000-90513200	Weak transcription	A549	lung
7	chr5:90509000-90514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:90509000-90514200	Weak transcription	Hela-S3	cervix
9	chr5:90509000-90514400	Weak transcription	Adipose Nuclei	Adipose
10	chr5:90509000-90514400	Weak transcription	K562	blood
11	chr5:90509200-90513000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr5:90509200-90514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:90509200-90514200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:90509200-90514200	Weak transcription	Osteobl	bone
15	chr5:90509200-90514400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:90509200-90514400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:90509200-90514400	Weak transcription	Fetal Intestine Large	intestine
18	chr5:90509400-90515000	Weak transcription	NHDF-Ad	bronchial
19	chr5:90510400-90514200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:90510600-90514200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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