Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90612170..90615161-chr5:90674810..90679119,5	MCF-7	breast:
2	chr5:90613052..90614595-chr5:90677675..90679840,2	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12514996	1.00[AFR][1000 genomes]
rs12520306	1.00[AFR][1000 genomes]
rs12521670	1.00[AFR][1000 genomes]
rs12658394	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12658748	1.00[AFR][1000 genomes]
rs2175437	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28369128	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56876862	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57859727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58781250	0.90[ASN][1000 genomes]
rs61156097	1.00[AFR][1000 genomes]
rs67220802	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67863612	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786318	0.94[AMR][1000 genomes]
rs72786321	0.84[AMR][1000 genomes]
rs72786324	0.84[AMR][1000 genomes]
rs72786325	0.89[AMR][1000 genomes]
rs72786326	0.94[AMR][1000 genomes]
rs72786338	0.94[AMR][1000 genomes]
rs72786350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72786353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786359	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9647558	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90610600-90614400	Weak transcription	HSMMtube	muscle
2	chr5:90611200-90614200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:90611200-90614400	Weak transcription	Fetal Thymus	thymus
4	chr5:90612400-90613600	Enhancers	A549	lung
5	chr5:90612600-90613800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:90612800-90613800	Enhancers	Ovary	ovary

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