Variant report

Variant	rs67863612
Chromosome Location	chr5:90610969-90610970
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90609791..90613058-chr5:90669226..90672505,3	MCF-7	breast:
2	chr5:90607284..90611861-chr5:90674569..90683045,11	K562	blood:
3	chr5:90607483..90611926-chr5:90672625..90681906,20	MCF-7	breast:
4	chr5:90605667..90612137-chr5:90676262..90681561,13	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12658394	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28369128	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107416	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56876862	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57859727	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58781250	0.90[ASN][1000 genomes]
rs67220802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6888057	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786350	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72786353	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786354	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786358	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786359	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786360	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90605400-90611200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr5:90605800-90611200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:90606000-90611200	Enhancers	Fetal Thymus	thymus
4	chr5:90606600-90612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:90606800-90611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:90607600-90611400	Enhancers	K562	blood
7	chr5:90607800-90611000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:90608400-90611200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:90609000-90611200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:90609000-90611200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:90609200-90612000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:90609600-90611400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:90610200-90611000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:90610200-90611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:90610200-90611000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:90610200-90611200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:90610200-90611200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:90610200-90611200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:90610200-90611200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:90610200-90611200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:90610200-90611600	Enhancers	Dnd41	blood
22	chr5:90610200-90612800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr5:90610400-90611200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:90610400-90612200	Enhancers	Primary B cells from cord blood	blood
25	chr5:90610400-90612200	Enhancers	Primary hematopoietic stem cells	blood
26	chr5:90610400-90612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:90610600-90611000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr5:90610600-90611000	Enhancers	Left Ventricle	heart
29	chr5:90610600-90611200	Enhancers	HepG2	liver
30	chr5:90610600-90611400	Enhancers	Hela-S3	cervix
31	chr5:90610600-90612000	Enhancers	A549	lung
32	chr5:90610600-90614400	Weak transcription	HSMMtube	muscle
33	chr5:90610800-90611200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr5:90610800-90611200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr5:90610800-90611400	Weak transcription	Right Atrium	heart

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