Variant report

Variant	rs72786359
Chromosome Location	chr5:90611959-90611960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12658394	0.87[EUR][1000 genomes]
rs28369128	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34107416	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56876862	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57859727	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58781250	0.81[ASN][1000 genomes]
rs67220802	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67863612	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6888057	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786350	0.90[EUR][1000 genomes]
rs72786353	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72786354	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72786358	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786360	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90606600-90612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:90609200-90612000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:90610200-90612800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:90610400-90612200	Enhancers	Primary B cells from cord blood	blood
5	chr5:90610400-90612200	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:90610400-90612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:90610600-90612000	Enhancers	A549	lung
8	chr5:90610600-90614400	Weak transcription	HSMMtube	muscle
9	chr5:90611200-90612600	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:90611200-90612800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:90611200-90612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:90611200-90614200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:90611200-90614400	Weak transcription	Fetal Thymus	thymus
14	chr5:90611400-90612600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:90611600-90612000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:90611600-90612800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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