Variant report

Variant	rs6888057
Chromosome Location	chr5:90617965-90617966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12658394	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28369128	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107416	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56876862	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57859727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58781250	0.90[ASN][1000 genomes]
rs67220802	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67863612	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786350	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72786353	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786354	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786359	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72786360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv441956	chr5:90614420-90621065	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2421594	chr5:90614420-90621069	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv514314	chr5:90614756-90620964	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90613800-90624400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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