Variant report

Variant	rs10943073
Chromosome Location	chr6:73658988-73658989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73652529..73654349-chr6:73656733..73659512,2	K562	blood:
2	chr6:73657119..73659540-chr6:73737347..73739182,2	MCF-7	breast:
3	chr6:73652529..73654943-chr6:73658012..73660027,2	K562	blood:
4	chr6:73655234..73657018-chr6:73657854..73660537,2	MCF-7	breast:
5	chr17:41563672..41566538-chr6:73658673..73660193,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12195276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539348	0.87[GIH][hapmap]
rs2000203	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10943073	CD109	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73650400-73660000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73653800-73660200	Weak transcription	Stomach Mucosa	stomach
4	chr6:73654600-73659000	Weak transcription	HSMM	muscle
5	chr6:73654600-73660200	Weak transcription	Aorta	Aorta
6	chr6:73654800-73662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73655800-73660000	Weak transcription	Psoas Muscle	Psoas
8	chr6:73655800-73660200	Weak transcription	Placenta	Placenta
9	chr6:73656000-73660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:73656200-73660000	Weak transcription	HSMMtube	muscle
11	chr6:73657000-73659000	Weak transcription	A549	lung
12	chr6:73657000-73659200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:73657000-73659400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:73657000-73659800	Weak transcription	Osteobl	bone
15	chr6:73657000-73662600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:73657200-73659400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:73657600-73660000	Weak transcription	Fetal Lung	lung
18	chr6:73658200-73659600	Weak transcription	NHLF	lung
19	chr6:73658600-73659200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:73658800-73659200	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:73658800-73659200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:73658800-73660000	Enhancers	Skeletal Muscle Male	skeletal muscle

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