Variant report

Variant	rs12195276
Chromosome Location	chr6:73657714-73657715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10943073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73650400-73660000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73653800-73660200	Weak transcription	Stomach Mucosa	stomach
5	chr6:73654400-73657800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:73654600-73659000	Weak transcription	HSMM	muscle
7	chr6:73654600-73660200	Weak transcription	Aorta	Aorta
8	chr6:73654800-73662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73655800-73660000	Weak transcription	Psoas Muscle	Psoas
10	chr6:73655800-73660200	Weak transcription	Placenta	Placenta
11	chr6:73656000-73660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:73656200-73660000	Weak transcription	HSMMtube	muscle
13	chr6:73657000-73659000	Weak transcription	A549	lung
14	chr6:73657000-73659200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:73657000-73659400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:73657000-73659800	Weak transcription	Osteobl	bone
17	chr6:73657000-73662600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:73657200-73659400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:73657600-73660000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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