Variant report

Variant	rs10943142
Chromosome Location	chr6:74597360-74597361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10943140	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943141	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943143	0.84[EUR][1000 genomes]
rs12194519	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201288	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12209436	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437573	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1437574	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1437575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837082	0.85[EUR][1000 genomes]
rs4706560	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55674496	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56084016	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56332290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67816133	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72961300	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:134 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526236	chr6:74563545-74662900	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv14513	chr6:74564769-74614549	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2757177	chr6:74567610-74625056	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759441	chr6:74567610-74625056	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1025650	chr6:74567731-74611185	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv34305	chr6:74571797-74675280	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv508412	chr6:74578788-74634589	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv34860	chr6:74580170-74633611	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1846903	chr6:74580433-74623759	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv5351	chr6:74590127-74643177	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3472817	chr6:74590324-74604022	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	esv3522826	chr6:74590924-74603622	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	esv2647833	chr6:74591335-74603027	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3522827	chr6:74591374-74603472	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	esv3522828	chr6:74591374-74603472	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv603696	chr6:74591411-74598936	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv603697	chr6:74591411-74599512	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv1850353	chr6:74591696-74605553	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	nsv436493	chr6:74591795-74602658	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
24	esv2763966	chr6:74591858-74601410	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv7320	chr6:74591859-74602698	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	esv2028549	chr6:74591872-74602655	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	esv1798575	chr6:74591885-74599512	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv1803313	chr6:74591885-74599512	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv1842913	chr6:74591885-74599512	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv1846706	chr6:74591885-74599512	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv3472823	chr6:74591935-74602547	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
32	esv3349630	chr6:74591961-74602530	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv3472820	chr6:74591979-74602509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
34	esv3472822	chr6:74591985-74602513	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv3472821	chr6:74592003-74602486	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
36	nsv823735	chr6:74592007-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
37	esv17644	chr6:74592011-74601507	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv7919	chr6:74592020-74605534	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	esv4040	chr6:74592032-74602568	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1845795	chr6:74592041-74599375	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	esv3474812	chr6:74592047-74600421	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv3472819	chr6:74592047-74602444	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	nsv499343	chr6:74592060-74602442	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	esv3474813	chr6:74592061-74600419	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
45	esv3472824	chr6:74592061-74602442	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	nsv823737	chr6:74592084-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv1801763	chr6:74592140-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1802669	chr6:74592140-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
49	esv1848808	chr6:74592140-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
50	esv1850843	chr6:74592140-74598760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74596000-74597400	Enhancers	Primary T cells from cord blood	blood
2	chr6:74596000-74597400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:74596000-74597600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr6:74596000-74598200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:74596200-74597400	Enhancers	Dnd41	blood
6	chr6:74596400-74597600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:74596400-74597600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:74596600-74597400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:74596600-74597400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:74596600-74597400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:74596600-74597600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:74596800-74598400	Enhancers	HUVEC	blood vessel

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