Variant report

Variant	rs10943546
Chromosome Location	chr6:79235696-79235697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10943541	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11751000	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11751048	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11753492	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753494	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11961184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962600	0.93[EUR][1000 genomes]
rs12524533	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12525455	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12528056	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12528933	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321593	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590226	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706057	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706058	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57804853	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58584672	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58650291	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58786177	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59310741	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59993965	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60533493	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60566783	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60610368	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60709431	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60962266	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62425506	0.92[EUR][1000 genomes]
rs62425551	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62425553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62425558	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62425559	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62426460	0.96[EUR][1000 genomes]
rs62426494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62426495	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927990	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930640	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9294113	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522646	chr6:79185106-79333988	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028767	chr6:79200713-79341224	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10943546	ELOVL4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79235000-79236400	Enhancers	Brain Germinal Matrix	brain

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