Variant report

Variant	rs60566783
Chromosome Location	chr6:79199530-79199531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79198690..79201151-chr6:79205518..79207322,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10943541	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10943546	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11751000	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11751048	0.93[EUR][1000 genomes]
rs11753492	0.92[EUR][1000 genomes]
rs11753494	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11961184	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11961886	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11962600	0.99[EUR][1000 genomes]
rs12524533	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12525455	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12528056	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12528933	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1321593	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1590226	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706057	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706058	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57804853	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58584672	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58650291	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58786177	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59310741	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59993965	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60533493	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60610368	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60709431	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60962266	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62425503	0.80[EUR][1000 genomes]
rs62425504	0.80[EUR][1000 genomes]
rs62425505	0.80[EUR][1000 genomes]
rs62425506	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62425551	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62425553	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62425558	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62425559	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62426460	0.96[EUR][1000 genomes]
rs62426494	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62426495	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927990	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6930640	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9294113	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1018006	chr6:79003806-79228498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1034028	chr6:79183693-79206340	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv522646	chr6:79185106-79333988	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79193200-79200000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:79195800-79202000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:79197400-79201800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:79197600-79201800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:79197600-79202000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:79197800-79201800	Weak transcription	HSMM	muscle
7	chr6:79199000-79199600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:79199200-79199600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:79199200-79199600	Flanking Active TSS	HUVEC	blood vessel
10	chr6:79199200-79199600	Enhancers	NH-A	brain
11	chr6:79199400-79200000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:79199400-79200000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:79199400-79200000	Enhancers	HMEC	breast

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