Variant report

Variant	rs10945910
Chromosome Location	chr6:164042307-164042308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10945912	0.85[ASN][1000 genomes]
rs11758523	0.88[ASN][1000 genomes]
rs12527518	0.85[ASN][1000 genomes]
rs13211174	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1407657	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1983789	0.80[AMR][1000 genomes]
rs34108663	0.83[EUR][1000 genomes]
rs34194488	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6455909	0.80[AMR][1000 genomes]
rs6902418	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6906484	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6910433	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6913583	0.80[AMR][1000 genomes]
rs6933936	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7767492	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9458867	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9458868	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164042000-164046800	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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