Variant report

Variant	rs10945955
Chromosome Location	chr6:164518318-164518319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484511	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10945953	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs11754236	1.00[JPT][hapmap]
rs206701	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9456928	1.00[JPT][hapmap]
rs9456929	1.00[JPT][hapmap]
rs9456930	1.00[JPT][hapmap]
rs9458980	0.92[ASN][1000 genomes]
rs9458981	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458986	1.00[JPT][hapmap]
rs9458989	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164507000-164519200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:164515000-164518600	Weak transcription	Psoas Muscle	Psoas
4	chr6:164515000-164519000	Weak transcription	HSMMtube	muscle
5	chr6:164515000-164522800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:164515200-164518400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:164516400-164520000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:164516600-164518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:164516600-164518600	Weak transcription	NHDF-Ad	bronchial
10	chr6:164516600-164519000	Weak transcription	HSMM	muscle
11	chr6:164517200-164518400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:164517800-164522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:164518000-164518800	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:164518000-164519000	Enhancers	Brain Substantia Nigra	brain
15	chr6:164518000-164519200	Enhancers	Right Ventricle	heart
16	chr6:164518000-164519400	Enhancers	Left Ventricle	heart
17	chr6:164518000-164520800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:164518200-164518400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:164518200-164518400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:164518200-164518400	Enhancers	Lung	lung
21	chr6:164518200-164518600	Enhancers	Right Atrium	heart
22	chr6:164518200-164518800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:164518200-164519000	Enhancers	Fetal Heart	heart
24	chr6:164518200-164519200	Enhancers	HUVEC	blood vessel
25	chr6:164518200-164519400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:164518200-164519400	Enhancers	Pancreas	Pancrea
27	chr6:164518200-164519600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:164518200-164519800	Enhancers	Adipose Nuclei	Adipose
29	chr6:164518200-164519800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:164518200-164520000	Enhancers	Brain Anterior Caudate	brain
31	chr6:164518200-164521000	Enhancers	Fetal Muscle Leg	muscle

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