Variant report

Variant	rs10946766
Chromosome Location	chr6:25387621-25387622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25387523..25389408-chr6:25391733..25393654,2	K562	blood:
2	chr6:25367288..25370021-chr6:25385958..25387793,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12525031	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890562	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4712924	0.83[JPT][hapmap]
rs4712926	0.87[CHB][hapmap]
rs4712928	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4712931	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs926403	0.88[JPT][hapmap]
rs926404	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv601168	chr6:25346334-25393306	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25370800-25388800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:25377400-25410600	Weak transcription	Gastric	stomach
3	chr6:25377800-25395600	Weak transcription	Pancreas	Pancrea
4	chr6:25378400-25389000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:25378800-25389000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:25378800-25389200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:25379800-25387800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:25380200-25389000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:25382000-25389200	Weak transcription	Aorta	Aorta
10	chr6:25383000-25403600	Weak transcription	Right Atrium	heart
11	chr6:25383600-25405000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:25384200-25391600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:25384800-25390600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:25385600-25389200	Weak transcription	Left Ventricle	heart
15	chr6:25385600-25390400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:25386400-25390800	Enhancers	Fetal Thymus	thymus
17	chr6:25387000-25389400	Enhancers	Thymus	Thymus
18	chr6:25387000-25389800	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:25387400-25388000	Enhancers	Primary B cells from cord blood	blood
20	chr6:25387400-25388000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr6:25387400-25388000	Enhancers	GM12878-XiMat	blood
22	chr6:25387400-25388200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:25387400-25388200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:25387400-25388400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:25387400-25388400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:25387400-25388400	Enhancers	Primary T cells from cord blood	blood
27	chr6:25387400-25389200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:25387400-25389800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr6:25387600-25388000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:25387600-25388200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:25387600-25388400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:25387600-25388400	Enhancers	Fetal Kidney	kidney

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