Variant report

Variant	rs926403
Chromosome Location	chr6:25370316-25370317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1079960	0.91[ASN][1000 genomes]
rs10946766	0.88[JPT][hapmap]
rs12525031	0.94[JPT][hapmap]
rs16890562	0.94[JPT][hapmap]
rs2223439	0.91[ASN][1000 genomes]
rs4712924	0.84[JPT][hapmap]
rs4712928	0.94[JPT][hapmap]
rs4712931	0.88[JPT][hapmap]
rs926404	0.88[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv601168	chr6:25346334-25393306	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25366600-25371800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:25367200-25370800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:25367200-25370800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:25367200-25370800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:25367200-25370800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:25367200-25370800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:25367800-25370400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:25367800-25370600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:25367800-25371000	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:25368000-25378400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:25368200-25370600	Enhancers	Dnd41	blood
12	chr6:25368200-25370800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:25368200-25371600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:25368200-25375400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:25369200-25370400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:25369200-25370400	Enhancers	Fetal Heart	heart
17	chr6:25369200-25370400	Enhancers	NHEK	skin
18	chr6:25369200-25370600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:25369200-25370800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr6:25369200-25370800	Enhancers	Fetal Lung	lung
21	chr6:25369200-25371400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:25369200-25371600	Enhancers	Fetal Intestine Small	intestine
23	chr6:25369400-25370400	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:25369400-25370400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:25369400-25370400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:25369400-25370400	Flanking Active TSS	Fetal Thymus	thymus
27	chr6:25369400-25370400	Enhancers	HSMM	muscle
28	chr6:25369400-25370400	Enhancers	NHDF-Ad	bronchial
29	chr6:25369400-25370600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:25369400-25370600	Enhancers	Brain Angular Gyrus	brain
31	chr6:25369400-25370600	Flanking Active TSS	Fetal Brain Female	brain
32	chr6:25369400-25370600	Enhancers	Fetal Muscle Leg	muscle
33	chr6:25369400-25370800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:25369400-25370800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:25369400-25370800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:25369400-25370800	Enhancers	Brain Hippocampus Middle	brain
37	chr6:25369400-25370800	Enhancers	Fetal Brain Male	brain
38	chr6:25369400-25370800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:25369400-25370800	Enhancers	Gastric	stomach
40	chr6:25369400-25370800	Enhancers	HMEC	breast
41	chr6:25369400-25371000	Enhancers	Pancreas	Pancrea
42	chr6:25369400-25371000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:25369400-25371000	Enhancers	Stomach Mucosa	stomach
44	chr6:25369400-25371400	Enhancers	Fetal Intestine Large	intestine
45	chr6:25369400-25371600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:25369600-25370400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:25369600-25370400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr6:25369600-25370400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:25369600-25370400	Enhancers	Right Atrium	heart
50	chr6:25369600-25370600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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