Variant report
Variant | rs10947109 |
---|---|
Chromosome Location | chr6:30836225-30836226 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-SFTA2-10 | chr6:30834759-30837610 | ENSG00000237775.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000202241 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11759918 | 0.88[ASN][1000 genomes] |
rs1264318 | 0.84[ASN][1000 genomes] |
rs1264319 | 0.84[ASN][1000 genomes] |
rs17189749 | 1.00[ASN][1000 genomes] |
rs17196123 | 0.87[ASN][1000 genomes] |
rs17840009 | 0.88[ASN][1000 genomes] |
rs2517576 | 0.81[ASN][1000 genomes] |
rs2535333 | 0.81[ASN][1000 genomes] |
rs2844657 | 0.84[ASN][1000 genomes] |
rs2844659 | 0.81[ASN][1000 genomes] |
rs2894054 | 0.85[ASN][1000 genomes] |
rs3218804 | 0.94[ASN][1000 genomes] |
rs3218825 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs45627239 | 1.00[ASN][1000 genomes] |
rs55697712 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59124304 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6926224 | 0.94[ASN][1000 genomes] |
rs6926723 | 0.94[ASN][1000 genomes] |
rs6940037 | 1.00[ASN][1000 genomes] |
rs73727104 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73727106 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73727107 | 0.91[ASN][1000 genomes] |
rs73727480 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7747800 | 0.87[ASN][1000 genomes] |
rs7761138 | 0.91[ASN][1000 genomes] |
rs7770596 | 0.94[ASN][1000 genomes] |
rs7772269 | 0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3519970 | chr6:30382942-31378788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1030 gene(s) | inside rSNPs | diseases |
2 | esv3519971 | chr6:30382942-31378788 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1030 gene(s) | inside rSNPs | diseases |
3 | nsv601481 | chr6:30422632-31284253 | Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1012 gene(s) | inside rSNPs | diseases |
4 | nsv1015372 | chr6:30704734-31582152 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 334 gene(s) | inside rSNPs | diseases |
5 | nsv538173 | chr6:30704734-31582152 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 334 gene(s) | inside rSNPs | diseases |
6 | nsv884108 | chr6:30821187-30838497 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv884109 | chr6:30824532-30872203 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:30835800-30836800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |