Variant report

Variant	rs10947446
Chromosome Location	chr6:33791998-33791999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33759914..33762466-chr6:33790813..33792897,2	MCF-7	breast:
2	chr6:33779857..33781549-chr6:33791871..33794080,2	MCF-7	breast:
3	chr6:33791904..33795612-chr6:33806607..33809462,3	K562	blood:
4	chr6:33754426..33756963-chr6:33790532..33792128,2	K562	blood:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10947436	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes]
rs11751943	0.82[AFR][1000 genomes]
rs1536501	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes]
rs1547668	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1951930	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182659	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes]
rs2395399	0.87[YRI][hapmap]
rs2395401	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes]
rs2395447	0.84[AFR][1000 genomes]
rs2395448	0.84[CEU][hapmap]
rs3957165	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4711350	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4713685	0.87[YRI][hapmap]
rs4713687	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713688	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs530614	0.83[CEU][hapmap]
rs602399	0.83[CEU][hapmap]
rs652049	0.83[CEU][hapmap]
rs6915136	1.00[JPT][hapmap]
rs751727	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs942496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs943463	0.83[CEU][hapmap]
rs943464	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs943472	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes]
rs9461905	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33781800-33792400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:33789000-33792400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:33789400-33795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:33790200-33792600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:33790200-33792800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:33790200-33793200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:33790400-33792400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33790400-33792600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33790800-33796000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:33790800-33796000	Weak transcription	Right Ventricle	heart
12	chr6:33791000-33792200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:33791000-33796000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:33791000-33796200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:33791000-33796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:33791600-33793000	Enhancers	Spleen	Spleen
17	chr6:33791600-33796400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:33791800-33792000	Enhancers	A549	lung
19	chr6:33791800-33795400	Weak transcription	H1 Cell Line	embryonic stem cell

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