Variant report

Variant	rs1951930
Chromosome Location	chr6:33782655-33782656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33776830..33783261-chr6:33784291..33788356,6	K562	blood:
2	chr6:33782037..33784695-chr6:33790224..33791744,2	K562	blood:
3	chr6:33780937..33783076-chr6:33806668..33808410,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10947436	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs10947446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11751943	0.81[AFR][1000 genomes]
rs1536501	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes]
rs1547668	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2182658	0.81[YRI][hapmap]
rs2182659	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs2395399	0.88[YRI][hapmap]
rs2395401	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs2395447	0.83[AFR][1000 genomes]
rs2395448	0.84[CEU][hapmap]
rs34095360	0.82[ASN][1000 genomes]
rs3957165	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711350	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4713685	0.88[YRI][hapmap]
rs4713687	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713688	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530614	0.83[CEU][hapmap]
rs602399	0.83[CEU][hapmap]
rs652049	0.83[CEU][hapmap]
rs6915136	1.00[JPT][hapmap]
rs751727	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs942496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943463	0.83[CEU][hapmap]
rs943464	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs943472	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs943476	0.81[YRI][hapmap]
rs9461905	0.84[CEU][hapmap]
rs9469599	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33778600-33784000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33778800-33782800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33780400-33783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:33780600-33783800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:33780600-33783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:33781600-33784000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:33781800-33784800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:33781800-33792400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:33782000-33783800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:33782200-33783400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:33782200-33783600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:33782200-33790600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:33782400-33783400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:33782600-33782800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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