Variant report

Variant	rs10947624
Chromosome Location	chr6:36669509-36669510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36664831..36667181-chr6:36668098..36669647,2	MCF-7	breast:
2	chr6:36590882..36591428-chr6:36669194..36670304,3	MCF-7	breast:
3	chr6:36665939..36668161-chr6:36669239..36671316,2	MCF-7	breast:
4	chr6:36668981..36671610-chr6:36673989..36676606,2	K562	blood:
5	chr6:36591348..36591899-chr6:36668578..36669604,3	K562	blood:
6	chr6:36560848..36563528-chr6:36666618..36669519,2	K562	blood:
7	chr6:36650062..36652279-chr6:36667260..36670117,2	MCF-7	breast:
8	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10807172	0.86[AMR][1000 genomes]
rs12526877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526889	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528085	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894559	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457941	0.86[AMR][1000 genomes]
rs6457942	0.84[AMR][1000 genomes]
rs6905861	0.86[AMR][1000 genomes]
rs6906101	0.86[AMR][1000 genomes]
rs6928344	0.86[AMR][1000 genomes]
rs9394375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
3	chr6:36666600-36670800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:36666600-36671000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:36666800-36670000	Enhancers	Primary B cells from cord blood	blood
6	chr6:36667000-36671400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:36667600-36669800	Enhancers	Stomach Mucosa	stomach
8	chr6:36667800-36670200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:36668400-36669800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:36668400-36669800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:36668400-36669800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:36668600-36669600	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:36668600-36669800	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:36668600-36669800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:36668600-36669800	Enhancers	NHEK	skin
16	chr6:36668600-36670000	Enhancers	HMEC	breast
17	chr6:36668600-36670400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:36668800-36669800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:36668800-36670000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:36668800-36670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36669000-36669600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:36669000-36669600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:36669000-36669600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:36669000-36669600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:36669000-36670000	Enhancers	HSMM	muscle
26	chr6:36669200-36669600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:36669200-36669600	Enhancers	Hela-S3	cervix
28	chr6:36669200-36669600	Enhancers	HUVEC	blood vessel
29	chr6:36669200-36669600	Enhancers	Osteobl	bone
30	chr6:36669200-36669800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:36669200-36669800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:36669400-36669600	Enhancers	Fetal Heart	heart
33	chr6:36669400-36669600	Enhancers	Placenta	Placenta
34	chr6:36669400-36669600	Enhancers	Gastric	stomach
35	chr6:36669400-36670000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:36669400-36670600	Enhancers	Spleen	Spleen

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