Variant report

Variant	rs12526889
Chromosome Location	chr6:36668983-36668984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36664831..36667181-chr6:36668098..36669647,2	MCF-7	breast:
2	chr6:36668981..36671610-chr6:36673989..36676606,2	K562	blood:
3	chr6:36591348..36591899-chr6:36668578..36669604,3	K562	blood:
4	chr6:36560848..36563528-chr6:36666618..36669519,2	K562	blood:
5	chr6:36650062..36652279-chr6:36667260..36670117,2	MCF-7	breast:
6	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10807172	0.86[AMR][1000 genomes]
rs10947624	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894559	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457941	0.86[AMR][1000 genomes]
rs6457942	0.84[AMR][1000 genomes]
rs6905861	0.86[AMR][1000 genomes]
rs6906101	0.86[AMR][1000 genomes]
rs6928344	0.86[AMR][1000 genomes]
rs9394375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36655200-36669400	Weak transcription	Gastric	stomach
3	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
4	chr6:36665400-36669400	Weak transcription	Spleen	Spleen
5	chr6:36666000-36669000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:36666600-36670800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:36666600-36671000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:36666800-36670000	Enhancers	Primary B cells from cord blood	blood
9	chr6:36667000-36669000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:36667000-36671400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:36667600-36669800	Enhancers	Stomach Mucosa	stomach
12	chr6:36667800-36670200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:36668400-36669800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:36668400-36669800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:36668400-36669800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:36668600-36669600	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:36668600-36669800	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:36668600-36669800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:36668600-36669800	Enhancers	NHEK	skin
20	chr6:36668600-36670000	Enhancers	HMEC	breast
21	chr6:36668600-36670400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36668800-36669800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:36668800-36670000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:36668800-36670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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