Variant report

Variant	rs10947707
Chromosome Location	chr6:37829817-37829818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37829312..37832098-chr6:37865008..37867935,3	MCF-7	breast:
2	chr6:37827459..37830301-chr6:37832209..37835878,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10485029	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1074234	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1187421	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187422	0.81[AFR][1000 genomes]
rs1187423	0.81[AFR][1000 genomes]
rs12190570	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211248	0.92[AFR][1000 genomes]
rs2055206	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs259679	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259718	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645117	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2645124	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34592529	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35806631	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35925070	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470706	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
2	chr6:37800200-37830200	Weak transcription	Ovary	ovary
3	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:37806800-37830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
8	chr6:37808600-37832600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:37812000-37831400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:37812000-37832600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:37812200-37830200	Weak transcription	Thymus	Thymus
12	chr6:37812400-37830800	Weak transcription	Fetal Thymus	thymus
13	chr6:37812600-37836000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:37813600-37845200	Weak transcription	K562	blood
15	chr6:37814000-37830800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:37814000-37835400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:37814200-37833400	Weak transcription	HSMMtube	muscle
18	chr6:37814400-37830800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:37814400-37831000	Weak transcription	Primary T cells from cord blood	blood
20	chr6:37816600-37830600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:37818000-37833800	Weak transcription	NHLF	lung
22	chr6:37818400-37831800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:37818400-37833400	Weak transcription	Gastric	stomach
24	chr6:37818400-37833400	Weak transcription	Right Ventricle	heart
25	chr6:37818400-37836000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:37818800-37830800	Weak transcription	Fetal Lung	lung
27	chr6:37819000-37830800	Weak transcription	Primary B cells from cord blood	blood
28	chr6:37819000-37831200	Weak transcription	GM12878-XiMat	blood
29	chr6:37819000-37833400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:37819200-37830800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:37819800-37830400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:37820000-37833600	Weak transcription	Adipose Nuclei	Adipose
33	chr6:37820000-37834600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:37820000-37835400	Weak transcription	Fetal Heart	heart
35	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
36	chr6:37820400-37830200	Weak transcription	HMEC	breast
37	chr6:37820400-37836000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:37820600-37830400	Weak transcription	Right Atrium	heart
39	chr6:37820800-37830000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:37824000-37842000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:37824400-37830600	Weak transcription	HSMM	muscle
42	chr6:37824400-37836200	Weak transcription	Fetal Intestine Large	intestine
43	chr6:37825000-37830200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:37825000-37830400	Weak transcription	HepG2	liver
45	chr6:37825800-37830200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:37825800-37833400	Weak transcription	Aorta	Aorta
47	chr6:37826000-37832600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:37826200-37830000	Weak transcription	NHEK	skin
49	chr6:37826200-37830200	Weak transcription	Esophagus	oesophagus
50	chr6:37826200-37830200	Weak transcription	Left Ventricle	heart

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