Variant report

Variant	rs35806631
Chromosome Location	chr6:37845530-37845531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37827303..37828901-chr6:37845340..37847699,2	K562	blood:
2	chr6:37786115..37788243-chr6:37843246..37845643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485029	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1074234	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947707	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187421	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187422	0.86[AFR][1000 genomes]
rs1187423	0.86[AFR][1000 genomes]
rs12190570	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211248	0.98[AFR][1000 genomes]
rs171831	0.80[AFR][1000 genomes]
rs2055206	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259679	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259695	0.82[AFR][1000 genomes]
rs259715	0.83[AFR][1000 genomes]
rs259718	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645117	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2645124	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34592529	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925070	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470706	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
2	chr6:37831000-37846000	Weak transcription	Esophagus	oesophagus
3	chr6:37834000-37845800	Weak transcription	Spleen	Spleen
4	chr6:37834000-37846000	Weak transcription	Lung	lung
5	chr6:37834000-37849200	Weak transcription	Fetal Thymus	thymus
6	chr6:37834800-37845600	Weak transcription	Pancreas	Pancrea
7	chr6:37834800-37849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:37835200-37845600	Weak transcription	Thymus	Thymus
9	chr6:37836400-37845800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:37836400-37846400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:37836400-37849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:37836400-37849000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:37836400-37849400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:37836400-37849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:37836600-37847800	Weak transcription	A549	lung
17	chr6:37836600-37849000	Weak transcription	Primary B cells from cord blood	blood
18	chr6:37837000-37849200	Weak transcription	HSMMtube	muscle
19	chr6:37837200-37845600	Weak transcription	NH-A	brain
20	chr6:37837200-37856000	Weak transcription	NHEK	skin
21	chr6:37838400-37846000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:37840200-37845800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:37840200-37845800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:37840200-37848000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:37840200-37855400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:37840400-37845800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:37840400-37850200	Weak transcription	HMEC	breast
28	chr6:37840400-37860000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:37840600-37845800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:37840600-37861800	Weak transcription	Primary T cells from cord blood	blood
31	chr6:37840800-37849200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:37841200-37849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:37841200-37852200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:37841400-37849000	Weak transcription	Placenta	Placenta
35	chr6:37841600-37862400	Weak transcription	Fetal Lung	lung
36	chr6:37841800-37850400	Weak transcription	Fetal Intestine Small	intestine
37	chr6:37842000-37849200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:37842200-37845800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:37842600-37845600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:37842800-37845600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:37842800-37846000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:37842800-37847200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:37842800-37849200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:37842800-37849200	Weak transcription	HepG2	liver
45	chr6:37843400-37848200	Enhancers	Liver	Liver
46	chr6:37843600-37845600	Weak transcription	Ovary	ovary
47	chr6:37843600-37846600	Weak transcription	Small Intestine	intestine
48	chr6:37843600-37847200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:37843800-37846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:37844000-37845600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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