Variant report

Variant	rs10947741
Chromosome Location	chr6:38478660-38478661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10947742	0.85[ASN][1000 genomes]
rs10947743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6900106	0.85[ASN][1000 genomes]
rs6938737	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38454400-38486400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:38468600-38486400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:38471600-38484200	Weak transcription	Right Atrium	heart
6	chr6:38471600-38493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:38472000-38482400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:38472000-38493800	Weak transcription	Lung	lung
9	chr6:38472400-38481800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:38476200-38478800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:38476600-38499800	Weak transcription	Pancreas	Pancrea
12	chr6:38476800-38481400	Weak transcription	Fetal Brain Male	brain
13	chr6:38476800-38481800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:38476800-38498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:38477000-38481600	Weak transcription	Brain Anterior Caudate	brain
16	chr6:38477400-38482400	Weak transcription	Fetal Stomach	stomach
17	chr6:38477600-38478800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:38477800-38498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:38478000-38480800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:38478000-38481200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:38478000-38482200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:38478000-38484800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:38478000-38484800	Weak transcription	Fetal Lung	lung
24	chr6:38478000-38485000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:38478000-38485000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:38478000-38485200	Weak transcription	Gastric	stomach
27	chr6:38478000-38494800	Weak transcription	Fetal Kidney	kidney
28	chr6:38478200-38480200	Weak transcription	NHLF	lung
29	chr6:38478200-38481800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:38478200-38482200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:38478200-38484200	Weak transcription	Ovary	ovary
32	chr6:38478200-38484800	Weak transcription	NHDF-Ad	bronchial
33	chr6:38478400-38478800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:38478400-38486200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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