Variant report

Variant	rs6938737
Chromosome Location	chr6:38477005-38477006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10947741	0.85[ASN][1000 genomes]
rs10947742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947743	0.95[ASN][1000 genomes]
rs2748153	1.00[CEU][hapmap]
rs2748155	1.00[CEU][hapmap]
rs2748156	0.81[JPT][hapmap]
rs2748158	1.00[CEU][hapmap]
rs2814886	1.00[CEU][hapmap]
rs4141854	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4631264	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6900106	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910904	0.86[CHB][hapmap]
rs6924443	0.81[JPT][hapmap]
rs724242	0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7752972	0.91[ASN][1000 genomes]
rs7753374	0.91[ASN][1000 genomes]
rs9296252	0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9357277	0.93[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9366965	0.91[ASN][1000 genomes]
rs9369065	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9394513	0.90[ASN][1000 genomes]
rs9394514	0.88[ASN][1000 genomes]
rs9394515	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9462439	0.91[ASN][1000 genomes]
rs9462441	1.00[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs9462442	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9470889	1.00[CEU][hapmap]
rs9470902	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38454400-38486400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:38468600-38486400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:38471600-38484200	Weak transcription	Right Atrium	heart
6	chr6:38471600-38493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:38472000-38482400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:38472000-38493800	Weak transcription	Lung	lung
9	chr6:38472400-38477600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:38472400-38481800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:38473200-38477200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:38474400-38478200	Enhancers	HSMMtube	muscle
13	chr6:38476000-38477200	Enhancers	Adipose Nuclei	Adipose
14	chr6:38476000-38477200	Enhancers	HepG2	liver
15	chr6:38476000-38477400	Enhancers	Fetal Stomach	stomach
16	chr6:38476000-38477800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:38476000-38477800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:38476000-38478000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:38476000-38478000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:38476000-38478200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:38476000-38478200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:38476000-38478200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:38476000-38478400	Enhancers	HSMM	muscle
24	chr6:38476200-38477200	Enhancers	NH-A	brain
25	chr6:38476200-38477400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:38476200-38477600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:38476200-38477600	Enhancers	Hela-S3	cervix
28	chr6:38476200-38478000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:38476200-38478800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:38476400-38477200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:38476400-38477200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:38476400-38477200	Enhancers	Ovary	ovary
33	chr6:38476400-38477200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:38476400-38477600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:38476400-38477800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:38476400-38478000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:38476400-38478000	Enhancers	Fetal Kidney	kidney
38	chr6:38476400-38478000	Enhancers	Fetal Lung	lung
39	chr6:38476400-38478000	Enhancers	A549	lung
40	chr6:38476400-38478200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr6:38476400-38478200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:38476400-38478200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:38476400-38478200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:38476400-38478200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:38476400-38478200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr6:38476400-38478200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr6:38476400-38478200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:38476400-38478200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:38476400-38478200	Enhancers	Placenta Amnion	Placenta Amnion
50	chr6:38476400-38478200	Enhancers	NHDF-Ad	bronchial

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