Variant report

Variant	rs9369065
Chromosome Location	chr6:38500328-38500329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10947742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10947743	0.85[ASN][1000 genomes]
rs10947753	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16890743	0.83[EUR][1000 genomes]
rs2748156	0.90[JPT][hapmap]
rs2748161	0.83[ASN][1000 genomes]
rs2814882	0.82[ASN][1000 genomes]
rs4141854	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236061	0.83[ASN][1000 genomes]
rs4631264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711552	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711553	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711554	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711555	1.00[EUR][1000 genomes]
rs4714166	0.83[EUR][1000 genomes]
rs4714171	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4714173	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4714174	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58362455	0.83[EUR][1000 genomes]
rs58648636	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59793635	0.83[EUR][1000 genomes]
rs6900106	0.91[ASN][1000 genomes]
rs6905545	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910904	0.86[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6924443	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6925790	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6931745	0.83[EUR][1000 genomes]
rs6938737	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs724242	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7750482	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7750997	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7752972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761154	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7767791	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7775968	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296252	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9296254	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296255	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349092	0.87[AMR][1000 genomes]
rs9349093	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349094	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357277	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9366965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366969	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369069	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369073	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380757	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380759	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380760	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380762	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380763	0.83[EUR][1000 genomes]
rs9394513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394514	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394515	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394516	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394519	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462439	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462441	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462442	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462446	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470901	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470902	0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470906	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470908	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470913	0.83[EUR][1000 genomes]
rs9470916	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv10306	chr6:38495659-38504443	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38479000-38509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:38485400-38500400	Weak transcription	Gastric	stomach
3	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:38487800-38502600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:38489000-38501000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:38490600-38503400	Weak transcription	Fetal Lung	lung
7	chr6:38492800-38508000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:38494400-38513800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:38494400-38515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:38494400-38518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
12	chr6:38494800-38522600	Weak transcription	Ovary	ovary
13	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:38496000-38502400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:38496200-38517600	Weak transcription	Esophagus	oesophagus
16	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:38496800-38521600	Weak transcription	Lung	lung
18	chr6:38497000-38517600	Weak transcription	Small Intestine	intestine
19	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:38497400-38502000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:38498400-38518400	Weak transcription	Primary B cells from cord blood	blood
23	chr6:38498800-38500400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:38499600-38500600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:38499800-38500400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:38499800-38500600	Enhancers	Left Ventricle	heart
27	chr6:38499800-38500800	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr6:38499800-38500800	Enhancers	Spleen	Spleen
29	chr6:38500000-38500600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:38500000-38500600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:38500200-38500400	Weak transcription	Right Ventricle	heart
32	chr6:38500200-38500800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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