Variant report

Variant	rs4631264
Chromosome Location	chr6:38487041-38487042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38033550..38035424-chr6:38486236..38488883,2	MCF-7	breast:
2	chr6:38480377..38484448-chr6:38485640..38487510,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10947742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10947743	0.85[ASN][1000 genomes]
rs10947753	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16890743	0.83[EUR][1000 genomes]
rs2748156	0.90[JPT][hapmap]
rs2748161	0.83[ASN][1000 genomes]
rs2814882	0.82[ASN][1000 genomes]
rs4141854	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236061	0.83[ASN][1000 genomes]
rs4711552	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711553	0.84[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711554	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711555	1.00[EUR][1000 genomes]
rs4714166	0.83[EUR][1000 genomes]
rs4714171	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4714173	0.90[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4714174	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58362455	0.83[EUR][1000 genomes]
rs58648636	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59793635	0.83[EUR][1000 genomes]
rs6900106	0.91[ASN][1000 genomes]
rs6905545	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910904	0.86[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs6924443	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6925790	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6931745	0.83[EUR][1000 genomes]
rs6938737	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs724242	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7750482	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7750997	0.83[EUR][1000 genomes]
rs7752972	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753374	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761154	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7767791	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7775968	0.84[GIH][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296252	0.90[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9296254	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296255	0.84[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349092	0.81[AMR][1000 genomes]
rs9349093	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349094	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357277	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9366965	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366969	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369069	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369073	0.84[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380757	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380759	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380760	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380762	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380763	0.83[EUR][1000 genomes]
rs9394513	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394514	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394515	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394516	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394519	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462439	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462441	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462446	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470901	0.85[CHD][hapmap];0.81[GIH][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470902	0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470906	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470908	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470913	0.83[EUR][1000 genomes]
rs9470916	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38471600-38493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:38472000-38493800	Weak transcription	Lung	lung
5	chr6:38476600-38499800	Weak transcription	Pancreas	Pancrea
6	chr6:38476800-38498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:38477800-38498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:38478000-38494800	Weak transcription	Fetal Kidney	kidney
9	chr6:38479000-38509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:38480400-38489800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:38482600-38493800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:38483200-38493600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:38483600-38493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:38485000-38487600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:38485000-38489800	Weak transcription	Brain Anterior Caudate	brain
16	chr6:38485200-38492200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:38485200-38496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:38485400-38487800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:38485400-38489600	Weak transcription	Fetal Stomach	stomach
20	chr6:38485400-38489600	Weak transcription	Left Ventricle	heart
21	chr6:38485400-38489600	Weak transcription	Psoas Muscle	Psoas
22	chr6:38485400-38489600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:38485400-38489800	Weak transcription	Fetal Lung	lung
24	chr6:38485400-38489800	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:38485400-38489800	Weak transcription	Ovary	ovary
26	chr6:38485400-38489800	Weak transcription	Right Atrium	heart
27	chr6:38485400-38489800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:38485400-38493600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:38485400-38493800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:38485400-38500400	Weak transcription	Gastric	stomach
31	chr6:38485600-38490400	Weak transcription	Small Intestine	intestine
32	chr6:38485600-38493800	Weak transcription	Fetal Intestine Large	intestine
33	chr6:38485800-38489600	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:38485800-38489800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:38485800-38493800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:38485800-38495600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:38486000-38493600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:38486200-38487800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:38486400-38487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:38486400-38487600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:38486400-38487600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr6:38486400-38493800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:38486400-38495600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:38486600-38487400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:38486600-38487600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:38486600-38487800	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr6:38487000-38492200	Weak transcription	HUVEC	blood vessel
48	chr6:38487000-38493600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood

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