Variant report

Variant	rs58362455
Chromosome Location	chr6:38582913-38582914
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10947753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141854	0.83[EUR][1000 genomes]
rs4631264	0.83[EUR][1000 genomes]
rs4711552	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711553	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711554	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711555	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4714171	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714173	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714174	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58648636	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905545	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925790	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7750482	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7750997	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752972	0.83[EUR][1000 genomes]
rs7753374	0.83[EUR][1000 genomes]
rs7767791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7775968	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296254	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296255	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9349092	0.84[ASN][1000 genomes]
rs9349093	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349094	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366965	0.83[EUR][1000 genomes]
rs9366969	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9369065	0.83[EUR][1000 genomes]
rs9369069	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369073	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380759	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380760	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394513	0.83[EUR][1000 genomes]
rs9394514	0.83[EUR][1000 genomes]
rs9394515	0.83[EUR][1000 genomes]
rs9394516	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462439	0.83[EUR][1000 genomes]
rs9462441	0.83[EUR][1000 genomes]
rs9462442	0.83[EUR][1000 genomes]
rs9462446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470901	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470902	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470906	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470908	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38565400-38589200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:38565800-38583200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38565800-38583600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:38568200-38584200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:38572000-38591600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:38580600-38600200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:38580600-38601800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:38580800-38585800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:38580800-38589400	Weak transcription	Right Atrium	heart
10	chr6:38580800-38594000	Weak transcription	Small Intestine	intestine
11	chr6:38580800-38604400	Weak transcription	Ovary	ovary
12	chr6:38581000-38585800	Weak transcription	HSMMtube	muscle
13	chr6:38581000-38586200	Weak transcription	Osteobl	bone
14	chr6:38581200-38585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:38581400-38585800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:38581800-38585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:38582200-38587200	Weak transcription	Psoas Muscle	Psoas
18	chr6:38582600-38583200	Weak transcription	Left Ventricle	heart
19	chr6:38582600-38587200	Weak transcription	Right Ventricle	heart
20	chr6:38582800-38583000	Enhancers	Lung	lung

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