Variant report

Variant	rs9366969
Chromosome Location	chr6:38532893-38532894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10947753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1579028	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs3799703	1.00[JPT][hapmap]
rs4141854	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4631264	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711552	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4711553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4711554	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4711555	0.83[EUR][1000 genomes]
rs4714171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714173	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4714174	0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58362455	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58648636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6458065	0.81[JPT][hapmap]
rs6905545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6925790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6932648	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs7750482	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7750997	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752972	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753374	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7767791	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9296254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9296255	0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9349092	0.93[AMR][1000 genomes]
rs9349093	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9349094	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366965	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369065	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9369069	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369073	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs937662	1.00[JPT][hapmap]
rs9380757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380759	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394513	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394514	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394515	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394516	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9394523	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs9394524	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs9462439	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462441	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462442	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462448	1.00[JPT][hapmap]
rs9462451	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs9470901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470902	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470916	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9470917	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs9470918	0.86[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38510600-38546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:38513000-38539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:38514200-38539400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:38515600-38535800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:38516000-38538800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:38517800-38535000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:38519200-38538800	Weak transcription	Primary T cells from cord blood	blood
11	chr6:38519200-38539400	Weak transcription	Left Ventricle	heart
12	chr6:38519600-38554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:38522800-38534800	Weak transcription	Fetal Heart	heart
14	chr6:38522800-38535200	Weak transcription	Psoas Muscle	Psoas
15	chr6:38523000-38571600	Weak transcription	HSMMtube	muscle
16	chr6:38523200-38534800	Weak transcription	NHLF	lung
17	chr6:38524000-38537400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:38524000-38539200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:38532200-38539600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:38532400-38547800	Weak transcription	Fetal Kidney	kidney
21	chr6:38532800-38538200	Weak transcription	Primary B cells from peripheral blood	blood

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