Variant report

Variant	rs9349092
Chromosome Location	chr6:38566702-38566703
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38565254..38567561-chr6:38606168..38608897,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183826	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10947753	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4141854	0.87[AMR][1000 genomes]
rs4631264	0.81[AMR][1000 genomes]
rs4711552	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4711553	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4711554	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4714171	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4714173	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4714174	0.93[AMR][1000 genomes]
rs58362455	0.84[ASN][1000 genomes]
rs58648636	0.93[AMR][1000 genomes]
rs6905545	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6925790	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7750482	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7750997	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7752972	0.87[AMR][1000 genomes]
rs7753374	0.87[AMR][1000 genomes]
rs7767791	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7775968	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9296254	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9296255	0.90[AMR][1000 genomes]
rs9349093	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9349094	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9366965	0.87[AMR][1000 genomes]
rs9366969	0.93[AMR][1000 genomes]
rs9369065	0.87[AMR][1000 genomes]
rs9369069	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9369073	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9380757	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9380759	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9380760	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9380762	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9380763	0.83[ASN][1000 genomes]
rs9394513	0.87[AMR][1000 genomes]
rs9394514	0.87[AMR][1000 genomes]
rs9394515	0.87[AMR][1000 genomes]
rs9394516	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9394519	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9462439	0.87[AMR][1000 genomes]
rs9462441	0.87[AMR][1000 genomes]
rs9462442	0.84[AMR][1000 genomes]
rs9462446	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9470901	0.87[AMR][1000 genomes]
rs9470902	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9470906	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9470908	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38523000-38571600	Weak transcription	HSMMtube	muscle
2	chr6:38535800-38578200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:38538000-38566800	Weak transcription	Esophagus	oesophagus
4	chr6:38540400-38567800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:38540400-38569200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:38541400-38568600	Weak transcription	Spleen	Spleen
7	chr6:38541600-38567000	Weak transcription	Small Intestine	intestine
8	chr6:38548200-38570800	Weak transcription	Fetal Kidney	kidney
9	chr6:38549000-38570800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:38556000-38580400	Weak transcription	Ovary	ovary
11	chr6:38556200-38567400	Weak transcription	Lung	lung
12	chr6:38557400-38571800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:38557400-38571800	Weak transcription	NHDF-Ad	bronchial
14	chr6:38557400-38578000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:38557800-38571600	Weak transcription	HMEC	breast
16	chr6:38557800-38572000	Weak transcription	NHLF	lung
17	chr6:38558800-38567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:38559600-38567400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:38560600-38566800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:38560600-38567400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:38560600-38568200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:38560600-38570800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:38560600-38570800	Weak transcription	Left Ventricle	heart
24	chr6:38560600-38570800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:38560600-38571000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:38560600-38571800	Weak transcription	HSMM	muscle
27	chr6:38560600-38574400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:38560800-38570800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:38560800-38571400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:38560800-38580000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:38560800-38580200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:38561400-38577600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:38561400-38578000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:38561600-38571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:38561800-38571600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:38561800-38571600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:38562000-38567600	Weak transcription	Brain Anterior Caudate	brain
38	chr6:38562000-38570600	Weak transcription	Fetal Lung	lung
39	chr6:38562000-38570800	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:38562000-38571800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:38562000-38574600	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:38562000-38578000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:38562200-38567600	Weak transcription	Psoas Muscle	Psoas
44	chr6:38562200-38570600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:38562200-38571200	Weak transcription	Liver	Liver
46	chr6:38562200-38571600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:38562200-38575000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:38562200-38580000	Weak transcription	Aorta	Aorta
49	chr6:38562600-38570600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:38562800-38579800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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