Variant report

Variant	rs10947767
Chromosome Location	chr6:38921240-38921241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10484848	0.91[CEU][hapmap]
rs10484849	0.91[CEU][hapmap]
rs10484851	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs10947766	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10947769	0.91[CEU][hapmap]
rs10947773	0.90[CEU][hapmap]
rs10947774	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs10947775	0.91[CEU][hapmap]
rs12190209	0.91[CEU][hapmap]
rs12192920	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs12196393	0.91[CEU][hapmap]
rs12202648	0.91[CEU][hapmap]
rs12202878	0.91[CEU][hapmap]
rs12203833	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12210777	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs12212950	0.91[CEU][hapmap]
rs12213273	0.89[CEU][hapmap]
rs1332014	0.81[ASN][1000 genomes]
rs1332016	0.91[CEU][hapmap]
rs1332017	0.90[CEU][hapmap]
rs1537231	0.96[CHD][hapmap];0.81[ASN][1000 genomes]
rs16891340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2235871	0.92[CHD][hapmap]
rs2273093	0.81[CHD][hapmap]
rs2395711	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs4714208	0.92[CHD][hapmap]
rs7738586	0.91[CEU][hapmap];0.81[MEX][hapmap]
rs7766930	0.92[CHD][hapmap]
rs9380815	0.81[ASN][1000 genomes]
rs9380817	0.92[CHD][hapmap]
rs9462469	0.92[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv602962	chr6:38907202-38940282	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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