Variant report

Variant	rs10949017
Chromosome Location	chr6:57175359-57175360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11962792	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11962881	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7770252	0.84[ASN][1000 genomes]
rs9382699	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57170400-57178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:57171000-57175600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:57171200-57177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:57171200-57178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:57171400-57177000	Weak transcription	HSMM	muscle
6	chr6:57171400-57177600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:57171400-57178000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:57171600-57177200	Weak transcription	NH-A	brain
9	chr6:57171600-57178200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:57172600-57177600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:57173200-57175400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:57173200-57177400	Weak transcription	NHLF	lung
13	chr6:57173400-57175400	Weak transcription	NHDF-Ad	bronchial
14	chr6:57173400-57177200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:57173600-57177400	Weak transcription	Osteobl	bone
16	chr6:57175200-57175400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:57175200-57175400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:57175200-57175400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:57175200-57175600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:57175200-57175800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:57175200-57177600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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