Variant report

Variant	rs9382699
Chromosome Location	chr6:57169715-57169716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57151577..57154543-chr6:57168750..57171657,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1019210	0.84[ASW][hapmap];0.82[CHB][hapmap]
rs10733187	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs10949017	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11962792	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11962881	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12664535	0.83[CHB][hapmap]
rs1741916	0.82[ASW][hapmap];0.80[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap]
rs2098172	0.82[CHB][hapmap]
rs2215511	0.81[CHB][hapmap];0.80[YRI][hapmap]
rs4288209	0.80[YRI][hapmap]
rs4712144	0.84[ASW][hapmap];0.82[CHB][hapmap]
rs4715654	0.84[ASW][hapmap];0.82[CHB][hapmap]
rs4715656	0.82[CHB][hapmap]
rs7770252	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57168000-57170600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:57168200-57169800	Enhancers	NHDF-Ad	bronchial
4	chr6:57168200-57170200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:57168200-57171600	Enhancers	Fetal Stomach	stomach
6	chr6:57168400-57170200	Enhancers	Ovary	ovary
7	chr6:57168400-57171800	Enhancers	NHLF	lung
8	chr6:57168600-57169800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:57168600-57171400	Enhancers	Colon Smooth Muscle	Colon
10	chr6:57168600-57171400	Enhancers	HSMM	muscle
11	chr6:57168600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:57168800-57170000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:57168800-57170400	Enhancers	Adipose Nuclei	Adipose
14	chr6:57168800-57171000	Enhancers	Osteobl	bone
15	chr6:57168800-57171200	Enhancers	HSMMtube	muscle
16	chr6:57169000-57170800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:57169200-57169800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr6:57169400-57170200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:57169400-57170400	Enhancers	Fetal Lung	lung
20	chr6:57169400-57170600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:57169400-57171600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:57169600-57169800	Enhancers	Fetal Kidney	kidney
23	chr6:57169600-57170000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:57169600-57170000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:57169600-57170200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:57169600-57170400	Active TSS	Duodenum Smooth Muscle	Duodenum

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