Variant report

Variant	rs10951132
Chromosome Location	chr7:26414418-26414419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26330267..26332166-chr7:26413349..26415882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10807832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951133	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951134	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951135	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951136	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951137	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531639	0.84[ASN][1000 genomes]
rs12670965	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12673463	0.84[ASN][1000 genomes]
rs13241375	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153504	0.84[ASN][1000 genomes]
rs3193526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461934	0.86[EUR][1000 genomes]
rs6461935	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461936	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6950352	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6967677	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780256	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7780650	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7799362	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9638835	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639536	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639538	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639539	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs966416	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26398600-26415400	Weak transcription	HMEC	breast
2	chr7:26402600-26415200	Enhancers	Liver	Liver
3	chr7:26403800-26415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:26404800-26415200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:26405400-26414600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:26405800-26414600	Weak transcription	K562	blood
7	chr7:26407400-26415400	Weak transcription	HepG2	liver
8	chr7:26407400-26415600	Weak transcription	Spleen	Spleen
9	chr7:26407600-26415400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:26409800-26415400	Weak transcription	GM12878-XiMat	blood
11	chr7:26410200-26414800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:26410200-26414800	Weak transcription	Fetal Thymus	thymus
13	chr7:26410200-26415200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:26410200-26415400	Weak transcription	Adipose Nuclei	Adipose
15	chr7:26410600-26414600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:26411200-26414800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:26412400-26415400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:26412400-26415400	Weak transcription	Placenta	Placenta
19	chr7:26413400-26414800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr7:26413400-26415600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:26413600-26415600	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr7:26413600-26416800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:26413800-26414600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr7:26414000-26414600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:26414000-26414800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:26414000-26417000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr7:26414200-26415200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:26414200-26416800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:26414400-26414600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:26414400-26414600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:26414400-26414600	Flanking Active TSS	HUVEC	blood vessel
32	chr7:26414400-26414800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:26414400-26414800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:26414400-26414800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
35	chr7:26414400-26415000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr7:26414400-26415200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links