Variant report

Variant	rs10951137
Chromosome Location	chr7:26428599-26428600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26427415..26429605-chr7:26480362..26482553,2	K562	blood:
2	chr7:26422992..26424851-chr7:26426516..26429377,2	K562	blood:
3	chr7:26427307..26429397-chr7:26431461..26434298,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10807832	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10951132	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10951133	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951134	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951135	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951136	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12531639	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12670965	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13241375	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3193526	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6461935	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6461936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950352	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6967677	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780256	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780650	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799362	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638835	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9639536	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9639538	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9639539	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs966416	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26418600-26436000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:26427600-26428600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr7:26427800-26430200	Enhancers	Brain Germinal Matrix	brain
4	chr7:26428200-26429200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:26428200-26429400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:26428200-26429600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:26428200-26430000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:26428200-26436000	Weak transcription	Fetal Brain Male	brain
9	chr7:26428200-26437400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:26428400-26428600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
11	chr7:26428400-26428800	Enhancers	GM12878-XiMat	blood
12	chr7:26428400-26429600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:26428400-26436800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:26428400-26436800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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