Variant report

Variant	rs10952364
Chromosome Location	chr7:140696374-140696375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140689349..140691695-chr7:140694980..140697473,2	MCF-7	breast:
2	chr7:140695085..140697025-chr7:140712863..140715092,2	K562	blood:
3	chr7:140691421..140693902-chr7:140694734..140697135,2	K562	blood:

Variant related genes	Relation type
ENSG00000090263	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10215245	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10240888	0.82[ASN][1000 genomes]
rs10255167	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10265001	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10268118	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1044927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12538296	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13234490	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13236223	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13236704	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1476816	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1533933	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1860720	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1961288	0.82[EUR][1000 genomes]
rs2079827	0.91[ASN][1000 genomes]
rs2079978	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs246739	0.91[ASN][1000 genomes]
rs3805116	0.82[CHB][hapmap]
rs3852286	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3864527	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38715	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs38717	0.93[ASN][1000 genomes]
rs38718	0.91[ASN][1000 genomes]
rs38720	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs38722	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs38723	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs38726	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs38730	0.82[ASN][1000 genomes]
rs38731	0.82[ASN][1000 genomes]
rs38734	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs38736	0.80[ASN][1000 genomes]
rs38739	1.00[CHB][hapmap]
rs38740	1.00[CHB][hapmap]
rs4726196	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4726225	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs488795	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs512509	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs528957	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs557962	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs58901822	0.91[ASN][1000 genomes]
rs62485452	0.87[ASN][1000 genomes]
rs62485453	0.91[ASN][1000 genomes]
rs6464217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464260	0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6662	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs6967214	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6971577	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7792447	0.94[EUR][1000 genomes]
rs7801518	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs801127	1.00[CHB][hapmap]
rs9274	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10952364	MRPS33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140692600-140698000	Weak transcription	Fetal Intestine Large	intestine
2	chr7:140693000-140697800	Weak transcription	HepG2	liver

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