Variant report

Variant	rs38736
Chromosome Location	chr7:140709184-140709185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140621971..140623569-chr7:140707032..140709391,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215245	0.91[ASN][1000 genomes]
rs1044927	0.93[ASN][1000 genomes]
rs1089264	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10952364	0.80[ASN][1000 genomes]
rs12538296	0.82[ASN][1000 genomes]
rs12703284	0.82[ASN][1000 genomes]
rs13234490	0.91[ASN][1000 genomes]
rs13236704	0.91[ASN][1000 genomes]
rs1476816	0.91[ASN][1000 genomes]
rs1533933	0.91[ASN][1000 genomes]
rs1860720	0.91[ASN][1000 genomes]
rs1961288	0.82[ASN][1000 genomes]
rs2079827	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079978	0.91[ASN][1000 genomes]
rs246739	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2688430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38715	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38717	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38718	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs38719	0.93[EUR][1000 genomes]
rs38720	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38722	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38723	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38726	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs38730	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38731	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38734	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38739	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38740	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726225	0.82[ASN][1000 genomes]
rs488795	0.84[ASN][1000 genomes]
rs490810	0.82[ASN][1000 genomes]
rs512177	0.82[ASN][1000 genomes]
rs512509	0.84[ASN][1000 genomes]
rs528957	0.84[ASN][1000 genomes]
rs533441	0.82[ASN][1000 genomes]
rs544081	0.84[ASN][1000 genomes]
rs545121	0.82[ASN][1000 genomes]
rs557962	0.82[ASN][1000 genomes]
rs569584	0.84[ASN][1000 genomes]
rs579518	0.82[ASN][1000 genomes]
rs58901822	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62485391	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62485452	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62485453	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6464217	0.82[ASN][1000 genomes]
rs6464260	0.91[ASN][1000 genomes]
rs6464284	0.82[ASN][1000 genomes]
rs6662	0.98[ASN][1000 genomes]
rs6967214	0.89[ASN][1000 genomes]
rs6971577	0.93[ASN][1000 genomes]
rs7792447	0.91[ASN][1000 genomes]
rs7801518	0.91[ASN][1000 genomes]
rs801117	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801121	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801127	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs801155	0.84[ASN][1000 genomes]
rs801159	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140698600-140713000	Weak transcription	Psoas Muscle	Psoas
2	chr7:140699600-140713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:140701400-140713400	Weak transcription	NHLF	lung
4	chr7:140702000-140709200	Weak transcription	Fetal Kidney	kidney
5	chr7:140702800-140713200	Weak transcription	HSMMtube	muscle
6	chr7:140703200-140709400	Weak transcription	HSMM	muscle
7	chr7:140703200-140713800	Weak transcription	Stomach Mucosa	stomach
8	chr7:140703400-140713800	Weak transcription	Gastric	stomach
9	chr7:140703600-140710800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:140703600-140713800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:140703600-140713800	Weak transcription	Lung	lung
12	chr7:140703800-140709200	Weak transcription	Osteobl	bone
13	chr7:140704000-140713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:140704400-140711400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:140704800-140710400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:140704800-140710400	Strong transcription	Fetal Brain Female	brain
17	chr7:140704800-140710600	Strong transcription	Fetal Muscle Leg	muscle
18	chr7:140704800-140711000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:140705000-140709800	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr7:140705000-140710200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:140705000-140710200	Strong transcription	Fetal Intestine Large	intestine
22	chr7:140705000-140710800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr7:140705000-140711000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:140705000-140712200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:140705000-140713600	Weak transcription	NH-A	brain
26	chr7:140705200-140710000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:140705200-140710000	Strong transcription	Brain Hippocampus Middle	brain
28	chr7:140705200-140710000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr7:140705200-140710200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:140705200-140710400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:140705200-140710400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:140705200-140710800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr7:140705200-140710800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:140705200-140710800	Strong transcription	Liver	Liver
35	chr7:140705200-140710800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:140705200-140710800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr7:140705200-140711400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:140705200-140713200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:140705200-140713200	Weak transcription	Brain Germinal Matrix	brain
40	chr7:140705200-140713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:140705400-140709200	Weak transcription	Colonic Mucosa	Colon
42	chr7:140705400-140709600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:140705400-140710000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:140705400-140710400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr7:140705400-140710400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:140705400-140710400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:140705400-140710400	Strong transcription	Adipose Nuclei	Adipose
48	chr7:140705400-140710600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:140705400-140710600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:140705400-140710600	Strong transcription	Fetal Lung	lung

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