Variant report

Variant	rs533441
Chromosome Location	chr7:140746740-140746741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215245	0.82[ASN][1000 genomes]
rs1044927	0.80[ASN][1000 genomes]
rs1089264	0.86[ASN][1000 genomes]
rs12703284	0.95[ASN][1000 genomes]
rs13234490	0.91[ASN][1000 genomes]
rs13236704	0.91[ASN][1000 genomes]
rs1476816	0.91[ASN][1000 genomes]
rs1533933	0.91[ASN][1000 genomes]
rs17630683	0.80[ASN][1000 genomes]
rs1860720	0.91[ASN][1000 genomes]
rs1961288	1.00[ASN][1000 genomes]
rs2079978	0.91[ASN][1000 genomes]
rs2688430	0.86[ASN][1000 genomes]
rs38734	0.82[ASN][1000 genomes]
rs38736	0.82[ASN][1000 genomes]
rs38739	0.84[ASN][1000 genomes]
rs38740	0.84[ASN][1000 genomes]
rs4726225	0.95[ASN][1000 genomes]
rs488795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs490810	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs512177	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs528957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs544081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs545121	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557962	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971084	0.82[ASN][1000 genomes]
rs569584	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579518	1.00[ASN][1000 genomes]
rs6464260	0.91[ASN][1000 genomes]
rs6464284	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6662	0.80[ASN][1000 genomes]
rs6967214	0.89[ASN][1000 genomes]
rs6971577	0.80[ASN][1000 genomes]
rs7792447	0.91[ASN][1000 genomes]
rs7801518	0.91[ASN][1000 genomes]
rs801117	0.86[ASN][1000 genomes]
rs801121	0.86[ASN][1000 genomes]
rs801127	0.86[ASN][1000 genomes]
rs801155	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs801159	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9274	0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs533441	MRPS33	cis	Nerve Tibial	GTEx
rs533441	MRPS33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140744000-140749000	Weak transcription	HSMMtube	muscle
2	chr7:140746400-140747600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:140746600-140753400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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