Variant report

Variant	rs1089264
Chromosome Location	chr7:140722854-140722855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215245	0.91[ASN][1000 genomes]
rs10240888	0.83[EUR][1000 genomes]
rs1044927	0.88[ASN][1000 genomes]
rs12703284	0.82[ASN][1000 genomes]
rs13234490	0.95[ASN][1000 genomes]
rs13236704	0.95[ASN][1000 genomes]
rs13438609	0.80[EUR][1000 genomes]
rs1476816	0.95[ASN][1000 genomes]
rs1533933	0.95[ASN][1000 genomes]
rs1860720	0.95[ASN][1000 genomes]
rs1961288	0.86[ASN][1000 genomes]
rs2079827	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2079978	0.95[ASN][1000 genomes]
rs246739	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688430	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38715	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38717	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38718	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38719	0.98[EUR][1000 genomes]
rs38720	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38722	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38723	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38730	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38736	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726225	0.82[ASN][1000 genomes]
rs488795	0.84[ASN][1000 genomes]
rs490810	0.82[ASN][1000 genomes]
rs512177	0.86[ASN][1000 genomes]
rs512509	0.84[ASN][1000 genomes]
rs528957	0.84[ASN][1000 genomes]
rs533441	0.86[ASN][1000 genomes]
rs544081	0.84[ASN][1000 genomes]
rs545121	0.86[ASN][1000 genomes]
rs557962	0.86[ASN][1000 genomes]
rs569584	0.84[ASN][1000 genomes]
rs579518	0.86[ASN][1000 genomes]
rs58901822	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62485391	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62485451	0.83[EUR][1000 genomes]
rs62485452	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62485453	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6464260	0.95[ASN][1000 genomes]
rs6464284	0.82[ASN][1000 genomes]
rs6662	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6967214	0.93[ASN][1000 genomes]
rs6971577	0.88[ASN][1000 genomes]
rs7792447	0.95[ASN][1000 genomes]
rs7801518	0.95[ASN][1000 genomes]
rs801117	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801127	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801155	0.84[ASN][1000 genomes]
rs801159	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140722400-140723600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:140722800-140723400	Enhancers	Primary T cells from cord blood	blood
3	chr7:140722800-140724000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr7:140722800-140724200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr7:140722800-140724400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr7:140722800-140724400	Enhancers	Primary T helper cells fromperipheralblood	blood

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