Variant report

Variant	rs801117
Chromosome Location	chr7:140732232-140732233
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140723301..140726429-chr7:140729686..140732291,3	K562	blood:
2	chr7:140713792..140716821-chr7:140730558..140733382,4	K562	blood:

Variant related genes	Relation type
ENSG00000090263	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215245	0.91[ASN][1000 genomes]
rs10240888	0.83[EUR][1000 genomes]
rs1044927	0.88[ASN][1000 genomes]
rs1089264	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703284	0.82[ASN][1000 genomes]
rs13234490	0.95[ASN][1000 genomes]
rs13236704	0.95[ASN][1000 genomes]
rs13438609	0.80[EUR][1000 genomes]
rs1476816	0.95[ASN][1000 genomes]
rs1533933	0.95[ASN][1000 genomes]
rs1860720	0.95[ASN][1000 genomes]
rs1961288	0.86[ASN][1000 genomes]
rs2079827	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2079978	0.95[ASN][1000 genomes]
rs246739	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688430	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38715	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38717	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38718	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38719	0.98[EUR][1000 genomes]
rs38720	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38722	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38723	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs38726	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38730	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38731	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38734	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38736	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs38739	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38740	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726225	0.82[ASN][1000 genomes]
rs488795	0.84[ASN][1000 genomes]
rs490810	0.82[ASN][1000 genomes]
rs512177	0.86[ASN][1000 genomes]
rs512509	0.84[ASN][1000 genomes]
rs528957	0.84[ASN][1000 genomes]
rs533441	0.86[ASN][1000 genomes]
rs544081	0.84[ASN][1000 genomes]
rs545121	0.86[ASN][1000 genomes]
rs557962	0.86[ASN][1000 genomes]
rs569584	0.84[ASN][1000 genomes]
rs579518	0.86[ASN][1000 genomes]
rs58901822	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62485391	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62485451	0.83[EUR][1000 genomes]
rs62485452	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62485453	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6464260	0.95[ASN][1000 genomes]
rs6464284	0.82[ASN][1000 genomes]
rs6662	0.93[ASN][1000 genomes]
rs6967214	0.93[ASN][1000 genomes]
rs6971577	0.88[ASN][1000 genomes]
rs7792447	0.95[ASN][1000 genomes]
rs7801518	0.95[ASN][1000 genomes]
rs801121	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801127	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801155	0.84[ASN][1000 genomes]
rs801159	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140727400-140732400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:140729800-140732400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:140732000-140732800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:140732200-140732600	Enhancers	HepG2	liver

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