Variant report

Variant	rs801155
Chromosome Location	chr7:140767950-140767951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140767357..140769762-chr7:140774657..140776517,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10215245	0.84[ASN][1000 genomes]
rs1044927	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1089264	0.84[ASN][1000 genomes]
rs10952364	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs12703284	0.98[ASN][1000 genomes]
rs13234490	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13236704	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1476816	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1533933	0.89[ASN][1000 genomes]
rs17630683	0.82[ASN][1000 genomes]
rs1860720	0.89[ASN][1000 genomes]
rs1961288	0.98[ASN][1000 genomes]
rs2079978	0.89[ASN][1000 genomes]
rs2688430	0.84[ASN][1000 genomes]
rs3805116	0.85[JPT][hapmap]
rs38715	0.86[CHB][hapmap]
rs38720	0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs38722	0.86[CHB][hapmap]
rs38723	0.86[CHB][hapmap]
rs38726	1.00[YRI][hapmap]
rs38730	0.82[ASN][1000 genomes]
rs38731	0.82[ASN][1000 genomes]
rs38734	0.86[CHB][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs38736	0.84[ASN][1000 genomes]
rs38739	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs38740	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs4726225	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs488795	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490810	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs512177	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs512509	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528957	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533441	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs544081	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545121	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs557962	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55971084	0.84[ASN][1000 genomes]
rs569584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579518	0.98[ASN][1000 genomes]
rs6464217	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6464260	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6464284	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6662	0.85[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6967214	0.87[ASN][1000 genomes]
rs6971577	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7792447	0.89[ASN][1000 genomes]
rs7801518	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs801117	0.84[ASN][1000 genomes]
rs801121	0.84[ASN][1000 genomes]
rs801127	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs801159	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9274	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs801155	MRPS33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140767000-140768000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:140767600-140768000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr7:140767800-140768000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
4	chr7:140767800-140768000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:140767800-140768000	Active TSS	K562	blood
6	chr7:140767800-140768200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links